on002799
NEMAR copy of ds002799

Human es-fMRI Resource: Concurrent deep-brain stimulation and whole-brain functional MRI

This dataset comprises concurrent deep-brain electrical stimulation and whole-brain functional MRI data from 26 patients with medically refractory epilepsy. Patients underwent intracranial electrode implantation for clinical purposes, with one or multiple electrode contacts stimulated during fMRI acquisition using block design protocols. The resource includes anatomical imaging (T1, T2), resting-state fMRI, electrical stimulation-fMRI (es-fMRI) scans, field maps, electrode coordinates, and stimulation parameters, along with preprocessed derivatives.

ANAT FMAP FUNC IEEG
Issues GitHub OpenNeuro ds002799

Download this dataset

dataset 175.7 GB exceeds 100.0 GB archive limit; use direct download. Use one of the streaming methods below — all resumable. Full download guide →

  1. NEMAR CLI recommended

    Pulls the pinned version + annexed data and resumes cleanly. Install nemar-cli → 

    nemar dataset download on002799
  2. DataLad

    Clone the dataset repo and fetch file content on demand. Docs → 

    datalad clone https://github.com/nemarDatasets/on002799 on002799
cd on002799 && datalad get .
  3. git-annex

    Plain git + git-annex against the dataset repo. Docs → 

    git clone https://github.com/nemarDatasets/on002799 on002799
cd on002799 && git annex get .
  4. Direct files (wget / curl / rclone)

    Every file with a stable, range-resumable URL from the manifest. Needs curl, jq, wget (or rclone/aria2c). Docs → 

    curl -s https://data.nemar.org/on002799/v1.0.0/manifest.json | jq -r '.[].bytes_url' > urls.txt
wget -xc -i urls.txt

Compute on this dataset

Two routes today, with a third (in-browser one-click submission) landing soon.

  1. NeuroScience Gateway (NSG) portal.

    NSG runs EEGLAB / Brainstorm / MNE pipelines on supercomputing time donated by SDSC. Create an account, point a job at this dataset's S3 prefix (s3://nemar/on002799), and submit.
    nsgportal.org →

  2. Local processing with nemar-cli.

    Pull the dataset to your machine and run any toolbox locally. Honors the published version pinning. 

    npm install -g nemar-cli
nemar dataset clone on002799
cd on002799 && nemar dataset get
  3. Just the files.

    rclone, aria2c, or any HTTPS client works against data.nemar.org/on002799/ — the manifest carries presigned S3 URLs.

Direct compute access is coming soon. One-click NSG submission from this page is scoped for a follow-up phase. Tracked on nemarOrg/website#6.

Citations

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    Files

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