on003844
NEMAR copy of ds003844

Dataset Clinical Epilepsy iEEG to BIDS -RESPect_intraoperative_iEEG

This dataset comprises intracranial EEG (iEEG) recordings from 12 epilepsy surgery patients enrolled in the RESPect registry at the University Medical Center of Utrecht. The collection includes both intraoperative electrocorticography (ECoG) recordings from six patients and long-term iEEG monitoring data from six patients (three ECoG, three stereo-encephalography). All data are organized according to the Brain Imaging Data Structure (BIDS) specification, with detailed metadata and event annotations to facilitate clinical and research applications in epilepsy surgery planning and outcome assessment.

IEEG
Issues GitHub OpenNeuro ds003844

Download this dataset

Pick a method. Large datasets skip the zip and use the streaming methods below — all resumable. Full download guide →

  1. Download archive (.zip) — 2.0 GB

    A single zip of the published version. Best for small/medium datasets.

    Download zip

  2. NEMAR CLI recommended

    Pulls the pinned version + annexed data and resumes cleanly. Install nemar-cli → 

    nemar dataset download on003844
  3. DataLad

    Clone the dataset repo and fetch file content on demand. Docs → 

    datalad clone https://github.com/nemarDatasets/on003844 on003844
cd on003844 && datalad get .
  4. git-annex

    Plain git + git-annex against the dataset repo. Docs → 

    git clone https://github.com/nemarDatasets/on003844 on003844
cd on003844 && git annex get .
  5. Direct files (wget / curl / rclone)

    Every file with a stable, range-resumable URL from the manifest. Needs curl, jq, wget (or rclone/aria2c). Docs → 

    curl -s https://data.nemar.org/on003844/v1.0.0/manifest.json | jq -r '.[].bytes_url' > urls.txt
wget -xc -i urls.txt

Compute on this dataset

Two routes today, with a third (in-browser one-click submission) landing soon.

  1. NeuroScience Gateway (NSG) portal.

    NSG runs EEGLAB / Brainstorm / MNE pipelines on supercomputing time donated by SDSC. Create an account, point a job at this dataset's S3 prefix (s3://nemar/on003844), and submit.
    nsgportal.org →

  2. Local processing with nemar-cli.

    Pull the dataset to your machine and run any toolbox locally. Honors the published version pinning. 

    npm install -g nemar-cli
nemar dataset clone on003844
cd on003844 && nemar dataset get
  3. Just the files.

    rclone, aria2c, or any HTTPS client works against data.nemar.org/on003844/ — the manifest carries presigned S3 URLs.

Direct compute access is coming soon. One-click NSG submission from this page is scoped for a follow-up phase. Tracked on nemarOrg/website#6.

Citations

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    Files

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